Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs17095949 | chr14:59716875 | A/G | 1.54E-8 | 487 | 16.3 | 14.1 | 5.45 | KM Plot |
| THCA | rs17095951 | chr14:59718628 | G/A | 1.37E-8 | 489 | 16.33 | 13.5 | 5.45 | KM Plot |
| THCA | rs17095960 | chr14:59723745 | G/A | 1.57E-8 | 488 | 16.37 | 13.5 | 5.45 | KM Plot |
| THCA | rs17095972 | chr14:59727022 | A/G | 1.57E-8 | 488 | 16.37 | 13.5 | 5.45 | KM Plot |
| THCA | rs17095974 | chr14:59728443 | C/T | 1.62E-8 | 487 | 16.33 | 13.5 | 5.45 | KM Plot |
| THCA | rs17095989 | chr14:59737859 | G/A | 2.62E-7 | 489 | 16.38 | 13.5 | 5.45 | KM Plot |
| THCA | rs17095990 | chr14:59738654 | G/A | 1.61E-8 | 487 | 16.38 | 12.7 | 5.45 | KM Plot |
| THCA | rs17096046 | chr14:59768135 | T/C | 2.17E-7 | 488 | 16.37 | 13.5 | 5.8 | KM Plot |
| THCA | rs17096048 | chr14:59768381 | G/A | 1.55E-8 | 487 | 16.33 | 13.5 | 5.45 | KM Plot |
| THCA | rs17096053 | chr14:59772866 | T/C | 1.38E-8 | 487 | 16.37 | 14.1 | 5.45 | KM Plot |
| THCA | rs17096056 | chr14:59772986 | C/T | 1.38E-8 | 487 | 16.37 | 14.1 | 5.45 | KM Plot |
| THCA | rs17096066 | chr14:59782604 | C/T | 1.58E-8 | 486 | 16.33 | 14.1 | 5.45 | KM Plot |
| THCA | rs17096074 | chr14:59789892 | G/T | 1.38E-8 | 487 | 16.37 | 14.1 | 5.45 | KM Plot |
| THCA | rs17096077 | chr14:59790240 | T/A | 1.38E-8 | 487 | 16.37 | 14.1 | 5.45 | KM Plot |
| THCA | rs17096084 | chr14:59791647 | A/G | 1.38E-8 | 488 | 16.37 | 13.5 | 5.45 | KM Plot |